stanford medicine

1. Value-based metrics in Medical imaging - A quantitative analysis of current practices using a neural network-based scoring system for performance evaluation (RAD-Ops).

  • Conception, study design, protocol, project management.

  • Data collection, arrangement and analysis.

 

2. Best use Clinical applications for Machine Learning methodologies.

  • Conception, literature review and analysis.


UCSF

Developing the Cancer Sharing (CanShare) Data Exchange Framework for Meaningful Research. (NIH-U01)

  • Conceptualization, study design, project management

  • Informatics support: cloud-based data exchange infrastructure

 


CELLSIGHT

F-AraG (Visact) T-cell imaging for Immunotherapy response assessment in Head/Neck cancer (Stanford) and Bladder cancer (UCSF). (NIH-SBIR)

  • Clinical trial design (phases II/III), grant writing and protocol.

  • Study interpretation, Quantitative image analysis, Radiomics.


MAYO CLINIC

1. Machine learning-based predictive modeling for diagnostic imaging of infections

  • Study design, neural network modeling, and data analysis.

 

2. Machine learning-based predictive modeling for Infective Endocarditis in the setting of Staph aureus bacteremia

  • Study design, neural network modeling, and data analysis.


Publications

articles

  1. Clinical Context Generation for Imaging: A Design Thinking-based Analysis of a Pilot Project. Shaikh F, Von Reden A, Kolowitz B, et al. Cureus 10(7): e3063. July, 2018. doi:10.7759/cureus.3063.

  2. Translational Radiomics – Defining the strategy pipeline & considerations for application - part I: from Methodology to Clinical implementation. F Shaikh, B Franc, E Allen, E Sala, O Awan, K Hendrata, S Halabi, S Mohiuddin, S Malik, R Shrestha. JACR. 2018.

  3. Translational Radiomics – Defining the strategy pipeline & considerations for application - part II: from Clinical implementation to Enterprise. F Shaikh, B Franc, E Allen, E Sala, O Awan, K Hendrata, S Halabi, S Mohiuddin, S Malik, R Shrestha. JACR. 2018.

  4. Computer-assisted Learning Applications in Health educational informatics - A review. F Shaikh, F Inayat, O Awan, A Choudhry, M Santos, A Waheed, D Kajal. S Tuli. Aug, 2017. Cureus 9(8): e1559. doi:10.7759/cureus.1559.

  5. Molecular Imaging in Genomic Medicine. F Shaikh, F Mulero, S Mohiuddin. Encyclopedia of Life Sciences, Wiley, July 2017.

  6. Technical challenges in Clinical Application of Radiomics - F Shaikh, O Awan, B Kolowitz, A von Reden, H Aerts, S Halabi, S Mohiuddin, S Malik, R Shrestha, C Deible. DOI: 10.1200/CCI.17.00004. JCO Clinical Cancer Informatics - published online May 4, 2017.

  7. Detection of Richter Transformation of Chronic Lymphocytic Leukemia into Diffuse B-cell Lymphoma based on Molecular and PET diagnostics. F Shaikh, F van Gestel, A Farooq, A Ahmad. Jan 2017. Cureus.

  8. Value-based assessment of Radiology Reporting using Radiologist-Referrer Two-way Feedback System - a Design Thinking-based analysis. F Shaikh, K Hendrata, O Awan, B Kolowitz, R Shrestha, C Deible. JDI. Dec 2016.

  9. RSNA Diagnosis Live: A Novel Web Based Audience Response Tool to Promote Evidence Based Learning. O Awan, F Shaikh, E Siegel, P Chang. Radiographics. 2017 Jul-Aug;37(4):1111-1118.

  10. Imaging, Endoscopic and Genetic Assessment of Marfan syndrome presenting with Sigmoid volvulus - A Case Review. F Inayat, A Huraira, F Shaikh. Cureus 8(5): e619. doi:10.7759/cureus.619. May, 2016.

  11. Molecular Imaging in Genetic Medicine - F Shaikh, A Jacob, F Van Gestel, S Yaghoubi. Cureus 8(4): e565. Mar, 2016. doi:10.7759/cureus.565.

  12. Multimodality Imaging for Malignant transformation assessment in Neurofibromatosis type 1 - Editorial. F Shaikh, O Awan. Jan, 2016. Omics J Radiol.

  13. 18F-FDG PET/CT imaging of Extranodal Rosai-Dorfman Syndrome with Hepatopancreatic involvement - A Pictorial Review. F Shaikh, O Awan, S Mohiuddin, S Farooqui, S Khan, W McCartney. Cureus. Dec 2015.

  14. Quantitative Imaging Analysis of FDG PET/CT Imaging for Detection of Central Neurolymphomatosis in a Case of Recurrent Diffuse B-Cell Lymphoma. F Shaikh, D Savells, O Awan et al. Cureus 7(11): e379. doi:10.7759/cureus.379. 2015.

  15. Educational Informatics in Academic Medicine & Imaging - F Shaikh. Omics J Radiol. 2015.

  16. Diagnostic yield of FDG PET/CT, MRI, and CSF cytology in nonbiopsiable Neurolymphomatosis as a heralding feature of Diffuse B-cell Lymphoma recurrence. F Shaikh, A Chan, O Awan, N Jerath, C Reddy, S Khan, M Graham. Cureus 7(9): e319. doi:10.7759/cureus.319. 2015.

  17. 18F-FDG PET/CT imaging of Gallbladder adenocarcinoma - A pictorial review. F Shaikh, O Awan, S Khan. Cureus 7(8): e298. doi:10.7759/cureus.298. 2015.

  18. Sinonasal NUT midline carcinoma - A Multimodality approach to diagnosis, staging and restaging. F Shaikh, N Pagedar, O Awan, P McNeely. Cureus 7(7): e288. doi:10.7759/cureus.288. 2015.

  19. Multimodality Molecular imaging correlation of a GLUT-1 positive Myopericytic lesion with atypical features. F Shaikh, B Huang, C Buchman, A Sheikh. OMICS Journal of Radiology. 2013 2:111.

  20. Debris-filled Biliary System – A difficult Diagnosis on MRI and MRCP. F Shaikh, M El-azzazi, A Ryan, R Semelka. Clinical Imaging. March 2012.

  21. MR Imaging findings of Rapidly Progressive Hepatocellular Carcinoma. AS Kierans, P Leonardou, P Hayashi, L Brubaker, M El-azzazi, F Shaikh, R Semelka. Mag Reson Imaging. 2010 Apr 26.

  22. Magnetic Resonance imaging of Gallbladder and Biliary system. M Bilgin, F Shaikh, R Semelka, S Bilgin, N Balci, A Erdogan. Top Mag Res Imag. 2009 Feb;20(1):31-42.

  23. MR Imaging findings of Small Bowel Hemorrhage. P Leonardou, A Kierans, M El-azzazi, F Shaikh, R Semelka. J Magn Reson Imaging. 2009 May;29(5):1185-9

  24. MR Imaging: Sequences we use and why. A Kierans, P Leonardou, F Shaikh, R Semelka. Applied Radiology 2009, May; 38(5).

  25. MR Findings of Post-traumatic Intravascular Hepatic Shunts. R Semelka, T Lessa, F Shaikh, F Miller, M El-azzazi. J Magn Reson Imaging 2009, Mar;29(3):617-20.


abstracts

  1. Utilizing Audience Response to Foster Evidence Based Learning: Does it really work? O Awan, F Dako, T Akhter, S Hava, F Shaikh, S Ali. (AUR Annual meeting 2019).

  2. Microsphere Transarterial Radioembolization (TARE) Treatment - Current Challenges in Prospective Response Assessment, and Future Trends in Optimization Using Next Generation Techniques. F Shaikh, A Sheikh. (presented at Annual SNMMI meeting 2018).

  3. Radiomics - Current challenges in Clinical validation. F Shaikh, O Awan, C Deible, B Kolowitz, K Hendrata, E Allen. (presented at the Annual SIIM meeting 2017).

  4. Machine learning-based approaches in Accelerating and Disseminating Research in Medical Imaging - Challenges & Opportunities. F Shaikh, E Allen, T Harris. JNM/SNMMI. May 2017.

  5. Value-based assessment of Radiology Reporting using Two-way Feedback System. F Shaikh, K Hendrata, E Gatts, D Butolya, R Shrestha, C Deible (presented at the Annual SIIM Meeting 2016).

  6. FDG PET/CT imaging of Gallbladder Adenocarcinoma. F Shaikh, S Bernard, O Awan, A Sheikh. (presented at SNMMI Annual Meeting 2015).

  7. Extraosseous tracer-avid findings on 18F-NaF PET/CT - A Pictorial Review. F Shaikh, Z Cizman, A Sheikh, A Khandani (presented at SNMMI Annual Meeting 2013).

  8. 18F-FDG PET/CT imaging of Extranodal Rosai-Dorfman Syndrome with Hepatopancreatic involvement. F Shaikh, S Mohiuddin, K Ali, S Farooqui, W McCartney. (presented at Society of Abdominal Radiology Annual Meeting, 2013).

  9. 18F-NaF Bone PET/CT: The Next Level in Musculoskeletal Nuclear Imaging. F Shaikh, A Khandani, J Etten. (presented at RSNA Annual Meeting, 2011).

  10. Radiosynovectomy – our experience with 42 patients with hemophilic arthropathy and pigmented villonodular synovitis. F Shaikh, W McCartney, A Sheikh, E Campion. J Nuc Med 2011; 52 (supplement 1):1385. (presented at SNM Annual Meeting, 2011).

  11. Microsphere Transarterial Radioembolization (TARE) Treatment - Current Challenges in Prospective Response Assessment, and Future Trends in Optimization Using Next Generation Techniques. F Shaikh, A Sheikh. (to be presented at Annual SNMMI meeting 2018).


textbook contributions

  1. Chapter: Nuclear Cardiology - Textbook: Netter’s Cardiology - Marschall Runge, et al. 3rd ed (in press), Saunders (2018).

  2. Chapter: Radiomics as applied in Precision medicine - Textbook: Clinical Nuclear Medicine, Biersack, et al. 2nd ed., Springer (2017).

  3. Chapter: Gallbladder and Biliary system - Textbook: Abdominal-pelvic MRI – Richard C. Semelka, MD. 3rd ed., Wiley. (2008).